Code and data sets for "MS²Rescore: Data-driven rescoring dramatically boosts immunopeptide identification rates"

Code used to prepare data sets, train and evaluate new MS²PIP models, evaluate MS²Rescore for immunopeptidomics, and generate figures. See README.md for more information on how to use these files and reproduce the results reported in the manuscript titled "MS²Rescore: Data-driven rescoring dramatically boosts immunopeptide identification rates".本代码可用于数据集制备、新型MS²PIP模型的训练与评估，针对免疫肽组学（immunopeptidomics）场景对MS²Rescore进行性能评估，以及科研图表的生成。有关如何使用这些文件并复现题为"MS²Rescore：数据驱动重打分显著提升免疫肽识别率"的学术论文中报告的实验结果的更多信息，请参阅README.md文件。