A nanopore based chromosome-level assembly representing Atlantic cod from the Celtic Sea.

File S1: Bioinformatics methods, tools and pipelines used to generate gadMor_Celtic
and other information complementing the materials and methods section can be
found here.

Table S1: Linkage
map of gadMor_Celtic: SNPs, position in gadMor_Celtic, genetic linkage of male,
female in centimorgan (cM) and SNP flank sequence from gadMor1 (NEAC).

Table S2: Predicted function of open reading frames were found with
TransDecoder and homology search using blastp against zebrafish and
stickleback protein databases.

Figure S1: Plots showing collinearity between genetic maps for males (red) and female (blue) and
the frequency of a 258bp tandem repeat structure (histogram) predicted to be related
to centromeres in all 23 chromosomes.

Table S3: This contains the list of genes in LGs 1, 2, 7 and 12.

File S2: The putative 258bp
centromere repeat sequence.
gadMor_celtic_repeat_Library.fa.txt - Repeat library

gadMor_Celtic.fa.txt -Genome assembly