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SNP dataset for 148 Kenyan, African and Eurasian honey bees (part 11)

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Mendeley Data2024-01-31 更新2024-06-27 收录
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http://datadryad.org/resource/doi:10.5061/dryad.jn630/16
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This dataset contains the 13+ million SNPs that were detected between 148 Kenyan, African and Eurasian honey bees using FreeBayes and that passed quality filtering. Details for SNP processing, sample labels and quality control is provided in the paper and its supplementary information. The original 148_honeybees.vcf.gz input file has been split into fourteen numbered parts (0 to 13). After downloading all parts, they can be joined to recreate the original file using the follwing UNIX command: cat 148_honeybees.vcf.gz.{0..13}.split > 148_honeybees.vcf.gz The VCF file can then be unzipped using the UNIX command: gunzip 148_honeybees.vcf.gz

本数据集收录了通过FreeBayes检测、且通过质量过滤的1300余万个单核苷酸多态性位点(Single Nucleotide Polymorphism,SNP),这些位点是在148只分别来自肯尼亚、非洲及欧亚大陆的西方蜜蜂样本间检测得到的。单核苷酸多态性位点的处理流程、样本标签及质量控制细节已在本论文及其补充材料中详述。原始输入文件148_honeybees.vcf.gz(变异检测格式(Variant Call Format,VCF)压缩包)已被拆分为14个编号分卷(编号0至13)。下载所有分卷后,可通过以下UNIX命令合并以还原原始文件:cat 148_honeybees.vcf.gz.{0..13}.split > 148_honeybees.vcf.gz。随后可通过UNIX命令gunzip 148_honeybees.vcf.gz解压该VCF文件。
创建时间:
2024-01-31
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