EGP Mitochondrial Genome Analysis on Simons Genome Diversity Project Whole-Genome Sequencing Data

Summary: This dataset consists of running EGP version 1.3 on whole-genome sequencing data from the SGDP. The link to EGP is here https://github.com/tycheleturner/ElGenomaPequeno. Author: Tychele N. Turner, Ph.D. Short Writeup: EGP version 1.3 on Simons Genome Diversity Project: Short-read WGS CRAM files were downloaded from the EMBL-EBI Public Data Globus Endpoint from the /1000g/ftp/data_collections directory. Post-download, the data was run through EGP version 1.3. The results are shown below: Public Dataset EGP Result File Type MD5 Simons Genome Diversity Project Mitochondrial Genome Fasta Files for MEGA 86b09553f80926c1c29c57000ec1a88f Simons Genome Diversity Project Mitochondrial Genome MitoMaster Result File 010026d77bee81e7b8daf5836bd12da3 Simons Genome Diversity Project Mitochondrial Genome Variant Tables f1ea3edf4a82b42f2028467fb3544dc4 Simons Genome Diversity Project Mitochondrial Genome Copy Number 4872eeb792c214ad49662e98e4b14620 Please note: I have found that with Zenodo you must use "Download All" for the copy number table to properly open.摘要：本数据集包含将EGP（ElGenomaPequeno）版本1.3运行于西蒙斯基因组多样性项目（SGDP，Simons Genome Diversity Project）的全基因组测序数据的分析结果。EGP的开源链接为：https://github.com/tycheleturner/ElGenomaPequeno。 作者：泰克尔·N·特纳（Tychele N. Turner）博士 简要说明：针对西蒙斯基因组多样性项目的EGP版本1.3分析流程如下：从欧洲分子生物学实验室欧洲生物信息研究所（EMBL-EBI）公共数据Globus端点的/1000g/ftp/data_collections目录中下载短读长全基因组测序（WGS，Whole-Genome Sequencing）CRAM文件，下载完成后使用EGP版本1.3进行分析，分析结果如下： 西蒙斯基因组多样性项目 用于MEGA的线粒体基因组FASTA文件 86b09553f80926c1c29c57000ec1a88f 西蒙斯基因组多样性项目 MitoMaster线粒体基因组分析结果文件 010026d77bee81e7b8daf5836bd12da3 西蒙斯基因组多样性项目 线粒体基因组变异表 f1ea3edf4a82b42f2028467fb3544dc4 西蒙斯基因组多样性项目 线粒体基因组拷贝数表 4872eeb792c214ad49662e98e4b14620 请注意：在Zenodo平台中，若需正常打开拷贝数表，必须使用“全部下载”功能。