Summed pairwise changes in log-likelihood values by chromosome given in descending order.

For each chromosome we imposed the final scaffold order from every cross onto every other cross and calculated the difference in the natural log likelihoods (ΔlnLk) between the crosses own order versus this imposed order. Sums are given on the set of ΔlnLks for each chromosome. A large positive ΔlnLk indicates a pair of crosses with highly incompatible orders.