File S1 - Modeling the Drosophila Gene Cluster Regulation Network for Muscle Development

Supporting tables and figures. Table S1: The interactions between the 20 genes involved in muscle development that have been observed experimentally. Table S2: Effect of the clustering algorithm and the number of clusters on the quality of the clusters. Table S3: Characteristics of the full and reduced solutions using the model structure and the reduction procedure . Figure S1: The four clusters of Drosophila muscle gene expression profiles containing more than one member. Figure S2: The average profile of the ten clusters. Figure S3: Experimental and estimated gene expression profiles, with q = 3. Figure S4: Experimental and estimated gene expression profiles for model with before and after parameter reduction using the procedure. Figure S5: Experimental and estimated gene expression profiles for model with before and after parameter reduction using the procedure. Figure S6: Experimental and estimated gene expression profiles for model with before and after parameter reduction using the procedure. Figure S7: Experimental and estimated gene expression profiles for model with before and after parameter reduction using the procedure, when the 17 experimentally validated connections are imposed. (PDF)