Data and scripts in Huang et al, "Comparative genomic analysis reveals metabolic flexibility of Woesearchaeota and a tendency toward an independent lifestyle"

This compressed file includes six folders: 1_single_protein_trees_of_orthologs: Alignments and treefiles used in the "Selection of orthologs for phylogenetic analysis of Woesearchaeota". 2_phylogenetic_trees_Woese&Pace: Alignments and treefiles of 152 MAGs for phylogenetic analysis based on 15 ribosomal proteins and the top-50% ranked orthologs 3_16S_rRNA_gene: Alignments and treefiles used in the 16S rRNA gene phylogenetic analysis 4_individual_protein_trees: Alignment and treefiles used in the phylogenetic analysis in fig.4, suppl. fig7-8, suppl. fig10-23 and suppl. fig25-42 5_protein_families_52_MAGs: The file includes alignment and treefile of phylogenetic analysis of 52 MAGs, ALE reconciliation results and protein families files 6_scripts Python scripts used in phylogenetic analysis and R scripts used in ecological analysis