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SPARC Connectivity Knowledge base of the Autonomic Nervous System

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Zenodo2024-11-05 更新2026-05-25 收录
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The SPARC Knowledge base of the Autonomic Nervous System (SCKAN) is an integrated graph database composed of three parts: the SPARC dataset metadata graph, ApiNATOMY and NPO models of connectivity, and the larger ontology used by SPARC which is a combination of the NIF-Ontology and community ontologies. The fastest way to get querying is to follow the instructions in the SCKAN readme file. For background information please see https://scicrunch.org/sawg/about/SCKAN and the SPARC portal resource page about SCKAN. This release contains the raw and compiled data for SCKAN. The release-*.zip contains raw data inputs along with the Blazegraph journal file, the sparc-sckan-graph-*.zip contains the SciGraph database, and sckan-data-*.tar.gz is a Docker image that contains the Blazegraph journal file and the SciGraph database along with the configuration files for running each of the servers. The image is intended to be used as a data volume with another Docker container that runs the SciGraph and Blazegraph server software. The Docker image containing this data is available live and is likely easier to use than the archived image included in this release. See the SCKAN readme file for the most up-to-date instructions. We would like to thank the members of the SAWG (SPARC Anatomy Working Group, RRID:SCR_018709) for their work on the various connectivity models included in this release. This work was funded by the NIH Common Fund under 3OT2OD030541-01S1.

自主神经系统SPARC知识库(SPARC Knowledge base of the Autonomic Nervous System,简称SCKAN)是一款集成式图数据库,由三部分组成:SPARC数据集元数据图、连接性相关的ApiNATOMY与NPO模型,以及SPARC所采用的大型本体——该本体由NIF本体(NIF-Ontology)与社区本体融合构建而成。 获取查询服务的最简途径为参照SCKAN自述文件中的操作指引。如需了解背景信息,可访问https://scicrunch.org/sawg/about/SCKAN 以及SPARC门户资源页面中关于SCKAN的相关内容。 本次发布包含SCKAN的原始数据与编译后数据。其中,release-*.zip 归档包内含原始数据输入文件与Blazegraph日志文件;sparc-sckan-graph-*.zip 归档包内含SciGraph数据库;sckan-data-*.tar.gz 为Docker镜像,该镜像包含Blazegraph日志文件、SciGraph数据库以及运行两类服务器所需的配置文件。该镜像旨在作为数据卷,与搭载SciGraph与Blazegraph服务器软件的其他Docker容器配合使用。 本发布包附带的存档镜像之外,另有一款可直接部署的在线Docker镜像,其易用性大概率优于存档镜像。最新操作指南请参阅SCKAN自述文件。 我们谨向SPARC解剖学工作组(SPARC Anatomy Working Group,简称SAWG,RRID:SCR_018709)的全体成员致谢,感谢他们为本发布包所涵盖的各类连接性模型所付出的工作。本项目受美国国立卫生研究院(NIH)共同基金资助,资助编号为3OT2OD030541-01S1。

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Zenodo
创建时间:
2022-12-23
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