Chromosome-level genome assembly of Triticum turgidum var 'Kronos' additional datasets

This data is made available under the Toronto Agreement. All of the data listed here is available under the prepublication data sharing principle of the Toronto agreement (1). By using this data, you agree to: respect the rights of the data producers and contributors to analyze and publish the first global analyses and certain other reserved analyses of this data set in a peer-reviewed publication. not redistribute, release, or otherwise provide access to the data to anyone outside of the group, until the data has been published & submitted to the public data repositories. contact the authors to discuss any plans to publish data or analyses that utilize this data to avoid the overlap of any planned analyses. fully cite the prepublication data along with any applicable versioning details. understand that this data as accessed is precompetitive and is not patentable in its present state. This agreement does not expire by time but only upon publication of the first global analysis by the data producers and contributors.(1) Toronto International Data Release Workshop Authors. Prepublication data sharing. Nature 461, 168–170 (2009). https://doi.org/10.1038/461168a If you have questions about the use of this dataset, please contact Ksenia Krasileva: kseniak [at] berkeley.edu Summary of the datasetsRepetitive elements were initially annotated using HiTE v3.0.0 and this repeat library was used to soft-mask the reference genomes v1.0 and v1.1. This dataset can be found in 01.HiTE.zip. After generating the reference annotation v2.0, we re-annotated repetitive elements with EDTA v2.2.2. To enhance repeat prediction and classification, complete and consensus repeats for Triticum were retrieved from the TREP database and included as curated libraries. Additionally, classified repeats from HiTE were integrated as RepeatModeler libraries. To prevent over-masking, the coding sequences of the v2.0 annotations were also provided. The outputs can be found in 02.EDTA.zip. Acknowledgement This work has been funded by the United States Department of Agriculture - National Institute for Food and Agriculture Award (2021-67013-35726). Please, feel free to reach out to us regarding this datasets本数据集依据《多伦多协议》（Toronto Agreement）开放共享。 本文所列全部数据均遵循《多伦多协议》的预印本数据共享原则(1)。使用本数据集即代表您同意以下条款： 1. 尊重数据生产者与贡献者的权益，可在同行评议期刊中优先发表针对本数据集的全球首次分析及部分特定保留分析成果； 2. 在本数据集正式发表并提交至公共数据仓储前，不得向团队以外的任何人员分发、发布或以其他方式提供本数据集的访问权限； 3. 若计划发表使用本数据集生成的数据或分析成果，请先联系作者以讨论相关计划，避免分析内容重复； 4. 完整引用该预印本数据及所有适用的版本信息； 5. 知悉本数据集当前处于竞争前阶段，目前无法获得专利保护。 本协议无时间限制，仅当数据生产者与贡献者完成首次全球分析并发表后终止。(1) 多伦多国际数据发布研讨会作者团队. 预印本数据共享[J]. 自然, 461, 168–170 (2009). https://doi.org/10.1038/461168a 若对本数据集的使用存在疑问，请联系克谢尼娅·克拉西列娃（Ksenia Krasileva）：kseniak [at] berkeley.edu 数据集概述 本数据集首先使用HiTE v3.0.0对重复序列进行注释，并将该重复序列库用于参考基因组v1.0与v1.1的软屏蔽处理，相关文件可于01.HiTE.zip中获取。在生成参考基因组注释v2.0后，我们使用EDTA v2.2.2重新注释了重复序列。为优化重复序列的预测与分类效果，我们从TREP数据库中获取了小麦属（Triticum）的完整共有重复序列，并将其作为手工整理的序列库纳入分析；同时整合了HiTE注释得到的已分类重复序列作为RepeatModeler序列库。为避免过度屏蔽，我们同时提供了v2.0注释的编码序列。最终分析结果可于02.EDTA.zip中获取。 致谢 本研究受美国农业部-国家食品与农业研究院项目（2021-67013-35726）资助。若对本数据集有任何疑问，欢迎随时联系我们。