TreeAlign Input and Output datasets (initial submission)

This repository provides the processed data necessary to reproduce the results for the initial TreeAlign paper submission. 

This includes the following:

Single cell whole genome sequencing (scDNA)

Copy number profiles

B allele frequency profiles

phylogenetic trees computed with HDBSCAN

benchmarking results vs other methods

10X single cell RNA sequencing (scRNA)

count matrices

reference and total read counts at heterozygous SNPs

meta data

TreeAlign output

Clone assignment for expression profiles

p(k) scores

p(a) scores