Easy genomic regions for short-read variant calling
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Panmask easy regions: pm151a.easy: excluding 151-mers occurring ≥1.01n times in the pangenome, where n is the number of genomes. pm151b.easy: further excluding low-complexity regions (LCRs) longer than 18bp identified by SDUST pm401a.easy: 401-mers. Not well evaluated. pm401b.easy: excluding LCRs longer than 30bp They exclude all assembly gaps and non-chromosomal contigs. See panmask for details.
Panmask 简易筛选区域(Panmask easy regions): pm151a.easy:排除泛基因组中出现频次≥1.01n的151聚体(151-mers),其中n为基因组的总数量。 pm151b.easy:进一步排除由SDUST算法识别的长度超过18bp的低复杂度区域(low-complexity regions, LCRs)。 pm401a.easy:基于401聚体(401-mers)构建,目前尚未得到充分评估。 pm401b.easy:排除长度超过30bp的低复杂度区域(LCRs)。 所有上述筛选规则均排除所有组装间隙与非染色体重叠群(contigs),详细信息请参阅panmask相关文档。
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Zenodo创建时间:
2025-06-17



