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De novo transcriptome assembly_raw data

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Figshare2020-01-21 更新2026-04-28 收录
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https://figshare.com/articles/dataset/De_novo_transcriptome_assembly_raw_data/11624157
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资源简介:
The "raw" transcriptome assembled was characterized using BLAST against different databases. The archive Transcriptome_blast.xlsx contains the similarity of Trinity transcripts against the non-redundant (nr), Prunus avium (P.avium), Uniprot and RefSeq databases. The Transcriptome_TF.xlsx archive describes the transcripts that codified transcription factor (TFs) and the gene families to which they belong. The Transcriptome_TransDecoder contains the transcripts with an Open Reading Frame (ORF).The Transcriptome_EggNOG.xlsx archive describe the orthology of transcripts. Description, Taxonomy level, GO and KEGG pathway terms are showed.The Transcriptome.fasta contains the nucleotide sequence of all transcripts assembled using Trinity software.
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2020-01-21
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