Library size confounds biology in spatial transcriptomics data

Name: Library size confounds biology in spatial transcriptomics data
Creator: SAiGENCI, The University of Adelaide; University of Melbourne; University of Adelaide; WEHI
Published: 2024-01-31T00:00:00+08:00

Zenodo2024-01-31 更新2026-04-07 收录

空间转录组学

文库大小效应

数据链接：

https://zenodo.org/doi/10.5281/zenodo.7959786 数据链接链接失效反馈

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资源简介：

This dataset contains annotated sub-cellular localised spatial measurements from the Visium, Xenium and CosMx platforms. Specifically, it includes datasets analysed in the publication Bhuva et. al, 2023 titled "Library size confounds biology in spatial transcriptomics data". Raw transcript detections are presented. Data is best accessed through the accompanying SubcellularSpatialData R/Bioconductor package. Region files used to annotate individual transcript detections are presented in the form of GeoJSON files.

提供机构：

SAiGENCI, The University of Adelaide; University of Melbourne; University of Adelaide; WEHI

创建时间：

2024-01-31