Summary of RegR binding studies with promoter regions of anoxically induced, RegR-controlled <i>B. japonicum</i> genes.

aAll listed genes are differentially expressed (FC<−2) in a comparison of the wild type with the ΔregR mutant both grown under the anoxic, denitrifying conditions as described in this work. bGene name as indicated in the EMBL-EBI database. cProtein description according to Kaneko and coworkers, 2002 [67]. dGenomic region included in the PCR fragment used for EMSAs. Coordinates refer to the first nucleotide position relative to the annotated translation start site of the genes listed in column 1. eIndicates qualitatively whether (+) or not (−) RegR binding was observed to the DNA fragments specified in column 4. fPosition of the 5′-end nucleotide of the putative RegR box (column 7) relative to the annotated translational start site of the associated gene. gSequence of the putative RegR binding sites. Conserved nucleotides are highlighted.