METRIN-KG Data
收藏Zenodo2026-02-18 更新2026-05-26 收录
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https://zenodo.org/doi/10.5281/zenodo.18652487
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资源简介：
Files associated with MEtabolomes, TRaits, and INteractions-Knowledge Graph (METRIN-KG). Contains input and output files used in mapping taxonomy, metadata, ontology and knowledge graph construction. Associated github repositories are metrin-kg and earth_metabolome_ontology
Directory structure looks like the following. This directory can be used in combination with the code at the github repo metrin-kg, globi raw data and TRY database raw data.
└── metrin-kg-data ├── ontology │ └── emi.ttl.gz ├── processed │ ├── globi │ │ ├── correctedBiologicalSexNames.tsv │ │ ├── correctedBodyPartNamesGlobi.csv │ │ ├── correctedLifeStageNamesGlobi.csv │ │ ├── mappedBiologicalSexNames.tsv │ │ ├── unmappedBiologicalSexNames.tsv │ │ ├── verbatim_mappedBodyPartNamesGlobi.csv │ │ ├── verbatim_mappedLifeStageNamesGlobi.csv │ │ ├── verbatim_unmappedBodyPartNamesGlobi_mod.csv │ │ └── verbatim_unmappedLifeStageNamesGlobi_mod.csv │ ├── KG │ │ ├── enpkg-rdf-v4.tar.gz │ │ ├── examples_METRINKG-v0.1.ttl.gz │ │ ├── globi_output_w3id_v0.ttl.gz │ │ ├── taxonomy_output_v0.ttl.gz │ │ ├── trydb_output_w3id_v0.ttl.gz │ │ └── void_METRINKG-v0.1.ttl.gz │ ├── trydb │ │ ├── EmiMappingToTryDb.txt │ │ ├── qudtMappingToTryDb_full.txt │ │ └── qudtMappingToTryDb.txt │ ├── wdTax_duplicates.txt │ ├── wdTax_GloBI.txt.gz │ ├── wdTax_SPARQL_lineage_filtered_aligned.txt.gz │ ├── wdTax_SPARQL_lineage_filtered.txt.gz │ ├── wdTax_SPARQL_lineage.txt.gz │ ├── wdTax_SPARQL.txt.gz │ └── wdTax_TRYdb.txt.gz └── raw ├── enpkg_wd_pfId.csv.gz └── Try20243712146549_TRY6.0_SpeciesList_TaxonomicHarmonization.csv
本数据集关联代谢组、性状与相互作用知识图谱（METRIN-KG，MEtabolomes, TRaits, and INteractions-Knowledge Graph），包含分类学映射、元数据处理、本体构建及知识图谱搭建流程中所使用的输入与输出文件。其关联的GitHub代码仓库为metrin-kg与earth_metabolome_ontology。
该数据集的目录结构如下，可与metrin-kg仓库中的代码、GloBI原始数据及TRY数据库原始数据配合使用：
└── metrin-kg-data
├── ontology
│ └── emi.ttl.gz
├── processed
│ ├── globi
│ │ ├── correctedBiologicalSexNames.tsv
│ │ ├── correctedBodyPartNamesGlobi.csv
│ │ ├── correctedLifeStageNamesGlobi.csv
│ │ ├── mappedBiologicalSexNames.tsv
│ │ ├── unmappedBiologicalSexNames.tsv
│ │ ├── verbatim_mappedBodyPartNamesGlobi.csv
│ │ ├── verbatim_mappedLifeStageNamesGlobi.csv
│ │ ├── verbatim_unmappedBodyPartNamesGlobi_mod.csv
│ │ └── verbatim_unmappedLifeStageNamesGlobi_mod.csv
│ ├── KG
│ │ ├── enpkg-rdf-v4.tar.gz
│ │ ├── examples_METRINKG-v0.1.ttl.gz
│ │ ├── globi_output_w3id_v0.ttl.gz
│ │ ├── taxonomy_output_v0.ttl.gz
│ │ ├── trydb_output_w3id_v0.ttl.gz
│ │ └── void_METRINKG-v0.1.ttl.gz
│ ├── trydb
│ │ ├── EmiMappingToTryDb.txt
│ │ ├── qudtMappingToTryDb_full.txt
│ │ └── qudtMappingToTryDb.txt
│ ├── wdTax_duplicates.txt
│ ├── wdTax_GloBI.txt.gz
│ ├── wdTax_SPARQL_lineage_filtered_aligned.txt.gz
│ ├── wdTax_SPARQL_lineage_filtered.txt.gz
│ ├── wdTax_SPARQL_lineage.txt.gz
│ ├── wdTax_SPARQL.txt.gz
│ └── wdTax_TRYdb.txt.gz
└── raw
├── enpkg_wd_pfId.csv.gz
└── Try20243712146549_TRY6.0_SpeciesList_TaxonomicHarmonization.csv
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Zenodo创建时间：
2026-02-16
