Repurposing of a DNA segregation machinery into a cytoskeletal system controlling cell shape

SOURCE DATA:

Data from the manuscript of Springstein et al., "Repurposing of a DNA segregation machinery into a cytoskeletal system controlling cell shape”.

- Alignments/
- Cyanobacteria_species.aln
Concatenation of the multiple sequence alignments of the RNA polymerase β and β′ subunit protein sequences from all Cyanobacteria species in the dataset, used to reconstruct a species phylogeny of the Cyanobacteria phylum.

- ParM_Bacteria.aln
Multiple sequence alignment of representative ParM proteins identified across all bacterial phyla.

- ParM_ParR_Cyanobacteria.aln
Concatenation of the multiple sequence alignments of ParM and ParR protein sequences identified in Cyanobacteria.

- Phylogenies/
- Cyanobacteria_species.treefile
Species phylogeny of Cyanobacteria (in Newick format).

- Cyanobacteria_species.pdf
Species phylogeny of Cyanobacteria (in pdf format with annotations).

- ParM_Bacteria.treefile
Phylogeny of ParM proteins identified across all bacterial phyla (in Newick format).

- ParM_Bacteria.pdf
Phylogeny of ParM proteins identified across all bacterial phyla (in pdf format with annotations).

- ParM_ParR_Cyanobacteria.treefiles
Phylogeny of the concatenation of ParM and ParR proteins identified in Cyanobacteria (in Newick format).

- ParM_ParR_Cyanobacteria.pdf
Phylogeny of the concatenation of ParM and ParR proteins identified in Cyanobacteria (in pdf format with annotations).

- Profiles/
- RNApolB.hmm
HMM profile used for the identification of RNA polymerase β proteins in the Cyanobacteria genomes.

- RNApolBp.hmm
HMM profile used for the identification of RNA polymerase β′ proteins in the Cyanobacteria genomes.

- ParM.hmm
HMM profile used for the identification of ParM proteins in bacterial genomes.

- ParR.hmm
HMM profile used for the identification of ParR proteins in bacterial genomes.

本数据集源自Springstein等人题为《将DNA分离机器重定向为调控细胞形态的细胞骨架系统》的手稿。

- Alignments/
- Cyanobacteria_species.aln：数据集内所有蓝细菌（Cyanobacteria）物种的RNA聚合酶β与β′亚基蛋白序列的多序列比对结果拼接文件，用于重构蓝细菌门的物种系统发育树。
- ParM_Bacteria.aln：在所有细菌门中鉴定到的代表性ParM蛋白的多序列比对文件。
- ParM_ParR_Cyanobacteria.aln：在蓝细菌中鉴定到的ParM与ParR蛋白序列的多序列比对结果拼接文件。

- Phylogenies/
- Cyanobacteria_species.treefile：蓝细菌物种系统发育树（Newick格式）。
- Cyanobacteria_species.pdf：带注释的蓝细菌物种系统发育树PDF文件。
- ParM_Bacteria.treefile：在所有细菌门中鉴定到的ParM蛋白的系统发育树（Newick格式）。
- ParM_Bacteria.pdf：带注释的所有细菌门ParM蛋白系统发育树PDF文件。
- ParM_ParR_Cyanobacteria.treefiles：蓝细菌中ParM与ParR蛋白拼接序列的系统发育树（Newick格式）。
- ParM_ParR_Cyanobacteria.pdf：带注释的蓝细菌ParM与ParR蛋白拼接序列系统发育树PDF文件。

- Profiles/
- RNApolB.hmm：用于在蓝细菌基因组中鉴定RNA聚合酶β蛋白的隐马尔可夫模型（Hidden Markov Model, HMM）配置文件。
- RNApolBp.hmm：用于在蓝细菌基因组中鉴定RNA聚合酶β′蛋白的隐马尔可夫模型（HMM）配置文件。
- ParM.hmm：用于在细菌基因组中鉴定ParM蛋白的隐马尔可夫模型（HMM）配置文件。
- ParR.hmm：用于在细菌基因组中鉴定ParR蛋白的隐马尔可夫模型（HMM）配置文件。