Refined, automatic nuclei segmentations in near-isotropic, reconstructed volume electron microscopy (FIB-SEM) of P7 mouse pancreas (jrc_mus-pancreas-4)

Segmentation description: Nuclei segmentations in jrc_mus-pancreas-4 using Cellpose 2.0 with minimal manual corrections.Software program: Cellpose 2.0Software program DOI: https://doi.org/10.1038/s41592-022-01663-4GPU: RTX A6000RAM: 256.0 GiBLabel voxel size (nm): 128 x 128 x 128 (x, y, z)Reconstructed data dimensions (µm): 146.23, 113.04 , 115.045 (x, y, z)Classes annotated: NucleusSource dataset (EM) ID: jrc_mus-pancreas-4Source dataset (EM) voxel size (nm): 8.0 x 8.0 x 8.0 (x, y, z)Source dataset (EM) data dimensions (µm): 146.27, 113.04 , 115.05 (x, y, z)Source dataset (EM) DOI: https://doi.org/10.25378/janelia.23411843Dataset URL: s3://janelia-cosem-datasets/jrc_mus-pancreas-4/jrc_mus-pancreas-4.zarr/recon-1/labels/inference/segmentations/nuc/Visualization website: https://openorganelle.janelia.org/datasets/jrc_mus-pancreas-4