Alignments and Trees for Chapter 2

Data generated and used for species delimitation for the article: Tang, C. Q., Leasi, F., Obertegger, U., Kieneke, A., Barraclough, T. G., &amp; Fontaneto, D. (2012). The widely used small subunit 18S rDNA molecule greatly underestimates true diversity in biodiversity surveys of the meiofauna. Proceedings of the National Academy of Sciences of the United States of America, 109, 16208–16212. Each dataset (of which there 55) comprises sequences either downloaded from GenBank or sequenced by the co-authors.<br>Alignments made with MAFFT within Geneious.<br>These alignments were collapsed into haplotype alignments.<br>Ultrametric trees were made from these using either BEAST or RaxML with r8s.