Spectral Cluster Supertree: Analysis Data

Contains all datasets used in the Spectral Cluster Supertree paper. The datasets are composed of a set of rooted model trees, and rooted source trees to predict them. Please cite the appropriate papers, depending on which of the datasets you use. The birth_death folder contains our own dataset generated for our paper (where the generation process is explained), it aims to mimic what may be seen through divide and conquer algorithms for phylogenetic reconstruction. Parameters used to simulate an alignment were simulated under parameters estimated from a sequence alignment of 3 bacterial species (Kaehler et al., 2015) - see alignment folder. The SMIDGenOutgrouped folder contains both the SMIDGenOG (Fleischauer and Böcker, 2016) and SMIDGenOG-5500 dataset (Fleischauer and Böcker, 2017). The SuperTriplets folder contains the SuperTriplets dataset (Ranwez et al, 2010).本数据集涵盖《Spectral Cluster Supertree》论文中使用的全部数据集。该数据集由若干带根模型树（rooted model trees），以及用于预测这些模型树的带根源树（rooted source trees）组成。请根据您所使用的具体数据集，引用对应的相关文献。 birth_death文件夹收录了为本论文生成的自有数据集（生成过程已在文中详述），其旨在模拟系统发育重建（phylogenetic reconstruction）中分治算法可得到的结果。用于模拟序列联配（sequence alignment）的参数，是基于3种细菌物种的序列联配数据（Kaehler等人, 2015）估算得到的——具体可参考alignment文件夹。 SMIDGenOutgrouped文件夹包含SMIDGenOG（Fleischauer与Böcker, 2016）和SMIDGenOG-5500（Fleischauer与Böcker, 2017）两个数据集。 SuperTriplets文件夹收录了SuperTriplets数据集（Ranwez等人, 2010）。