From the ranked list of all SNPs predicted by Bubbleparse in contigs of over 200 nt, the top 48, as well as 16 from 25%, 50% and 75% down the list were tested with Sanger sequencing. This confirmed al
Additional file 4:Accessions employed in the SNV validation. Landraces were provided by the COMAV genebank, comercial cultivars were obtained from Semilleros Cucala Agricola (Beniganim, Spain). (CSV 1
SNP validation by discovery by variant calling group. SNPs discovered from whole genome sequence (See calling groups in Additional file 1: Table S1) were validated by assessing the minor allele freque
Custom genotyping arrays provide a flexible and accurate means of genotyping single nucleotide polymorphisms (SNPs) in a large number of individuals of essentially any organism. However, validation ra
Custom genotyping arrays provide a flexible and accurate means of genotyping single nucleotide polymorphisms (SNPs) in a large number of individuals of essentially any organism. However, validation r