Car_ign_all_intragenomic_SNP_indel_variation_from_1200bp+_contigs

Variant call format (VCF) file containing potential single nucleotide polymorphisms (SNPs) and indels variation extracted from nucleotide contigs >=1,200 bp assembled from 139,329,276 100 bp pair end (PE) reads from an Illumina HiSeq 2000 using Ray v2.0.0 for Caranx ignobilis. The following filters were applied with the program vcf-annotate: –f +/c3,10/Q=20/d=15/D=25. This file contains SNPs and indels that DID and DID NOT pass filtering.

本数据集为变异检测格式（Variant call format, VCF）文件，包含从针对珍鲹（Caranx ignobilis）的测序组装结果中提取的潜在单核苷酸多态性（single nucleotide polymorphisms, SNPs）与插入缺失变异（indels）。该组装以Illumina HiSeq 2000平台产出的139,329,276条100 bp双端（PE）读段为输入，使用Ray v2.0.0软件完成，其中组装得到的核苷酸重叠群长度≥1,200 bp。本次分析通过vcf-annotate工具应用了如下过滤参数：–f +/c3,10/Q=20/d=15/D=25。本文件同时涵盖通过过滤与未通过过滤的SNPs及indels变异。