Supplementary Tables from Multi-Omics Profiling Reveals Distinct Microenvironment Characterization and Suggests Immune Escape Mechanisms of Triple-Negative Breast Cancer

Supplementary Table 1. The compendium of microenvironment cell subtypes in triple-negative breast cancer. Supplementary Table 2. Correlation of estimated microenvironment cell numbers between our compendium and CIBERSORT or MCP-counter. Supplementary Table 3. Clinicopathological characteristics of three microenvironment phenotypes in FUSCC, METABRIC and TCGA cohort. Supplementary Table 4. Prognostic value of each cell subset by univariate Cox proportional hazards model for relapse free survival. Supplementary Table 5. The signatures of ten oncogenic pathways. Supplementary Table 6. Comparison of gene mutation frequency among clusters. Supplementary Table 7. Comparison of somatic copy number alterations among clusters. Supplementary Table 8. GO and KEGG annotation of genes in cluster-specific copy number variation peaks.