TFBS Predictions

NIAID Data Ecosystem2026-05-01 收录

转录因子预测

干细胞基因调控

数据链接：

https://figshare.com/articles/dataset/TFBS_Predictions/25130615 数据链接链接失效反馈

官方服务：

资源简介：

This compressed directory contains three files with predicted transcription factor binding sites from TOBIAS for iPSC, cardiovascular progenitor cell (CVPC), and pancreatic progenitor cell (PPC) ATAC-seq samples.

创建时间：

2024-02-01

TFBindFormer_dataset

转录因子预测

DNA相互作用

This dataset contains the training, validation, and test data used for transcription factor (TF)–DNA binding prediction in the TFBindFormer framework. It integrates genomic DNA sequence bins with tran

Zenodo2026-01-26 更新90

Transcriptomes of miR-290-295 KO mESCs treated with siPOOLs against the transcription factor Tfap4

干细胞基因调控

miRNA靶标识别

In order to identify direct microRNA targets in mouse embryonic stem cells (mESCs), we knocked out microRNA effector genes, profiled their transcriptomes and integrated the data with additional publis

NIAID Data Ecosystem40

Average AUC in cross-classification experiments.

转录因子预测

交叉分类性能评估

Table 6 indicates the average AUC score across ten classifiers where training data from one TF (rows) was used to train a classifier that classified TFBS for another TF (columns).

Figshare2015-12-02 更新30

Gene expression changes in human cord blood-derived hematopoietic stem and progenitor cells upon Centrifugation enhanced Nanostraw Transfection or Conventional Electroporation. Gene expression changes in human cord blood-derived hematopoietic stem and progenitor cells upon Centrifugation enhanced Nanostraw Transfection or Conventional Electroporation

基因组学技术评估

干细胞基因调控

CD34+ human cord blood-derived cells were subjected to GFP mRNA delivery or mock treatment using Centrifugation enhanced Nanostraw Transfection (CeNT) or conventional electroporation. Overall design:

NIAID Data Ecosystem50

Genome-wide maps of nascent transcriptions in proliferating Ctrl and Suv420h1 mutant muscle stem cells. Genome-wide maps of nascent transcriptions in proliferating Ctrl and Suv420h1 mutant muscle stem cells

新生转录组学

干细胞基因调控

To profile the nascent transcription activity including coding genes and eRNAs, we performed precision nuclear run-on sequencing (PRO-Seq) in control and Suv420h1 mutant MuSC Overall design: PRO-seq i

NIAID Data Ecosystem40

TFBS Predictions

资源简介：

相关数据集