The dataset archives of SIDERITE (siderophore information database)

The update of SIDERITE. It covers all 1018 known siderophores from 1779 records as of Dec 2025. SIDERITE_records_20251231.xlsxcontains 1779 siderophore records SIDERITE_unique_structures_20251231.xlsxcontains 1018 unique siderophore structures The same siderophore structures can be found in different species, leading to multiple records. Therefore, the number of siderophore records can exceed the number of unique siderophore structures. Non-natural_siderophore_records_20251231.xlsxAs SIDERITE is a natural product database, it doesn’t include artificial siderophores, those synthesized by supplementing precursors, or variants produced by gene knock-out strains, though we record their names and references as supplements. (No update compared to last version) If you find SIDERITE useful, please cite: Ruolin He, Shaohua Gu, Jiazheng Xu, et al. 2024. “ SIDERITE: Unveiling Hidden Siderophore Diversity in the Chemical Space Through Digital Exploration.” iMeta e192. https://doi.org/10.1002/imt2.192 Ruolin He, Jiazheng Xu, Jiqi Shao, et al. 2025. " Tracing Siderophore Precursors to Primary Metabolism for Ecological Applications. " bioRxiv. https://doi.org/10.1101/2025.04.30.651379本文件为SIDERITE数据库的更新版本。 截至2025年12月，本数据集基于1779条原始记录，收录了全部1018种已知铁载体（siderophore）。 文件SIDERITE_records_20251231.xlsx包含1779条铁载体记录；文件SIDERITE_unique_structures_20251231.xlsx收录了1018个独特的铁载体结构。 由于同一种铁载体结构可在不同物种中被发现，因此会对应多条记录，这使得铁载体记录总数多于独特铁载体结构的数量。 文件Non-natural_siderophore_records_20251231.xlsx：鉴于SIDERITE为天然产物数据库，故未收录人工合成铁载体、通过前体补充合成的铁载体，以及基因敲除菌株所产生的铁载体变体，但我们已将其名称与参考文献作为补充材料进行记录。（本部分未进行更新，与上一版本一致） 若您认为SIDERITE数据库对您的研究有所帮助，请引用以下文献： 何若琳, 顾少华, 许嘉政, 等. 2024. SIDERITE: 通过数字化探索揭示化学空间中隐藏的铁载体多样性. iMeta e192. https://doi.org/10.1002/imt2.192 何若琳, 许嘉政, 邵吉琦, 等. 2025. 追踪铁载体前体的初级代谢路径以开展生态学应用研究. bioRxiv. https://doi.org/10.1101/2025.04.30.651379