Summary of phage related genes identified in host interaction candidate pool.

A. Host interaction candidate genes found within putative prophage regions identified in PHASTER analysis. Similar N. meningitidis and N. gonorrhoeae genes reported from KEGG database GFIT SSDB Tables or (*) blastp Searches. Genes are listed with Tn5 directed read fold change from BioTradis analysis. B. Overview of PHASTER prophage analysis performed on N. musculi reference sequence. 11 regions were identified as putatively intact prophages or incomplete regions based on comparison to known phage genomes. C. Per Region breakdown of N. musculi ORFs. Log2FC of significant hits in host passage samples is listed when applicable. * Fold change and/or Refseq ID in red text indicates gene was identified in putative fitness defect set and was ignored in final analysis of host interaction candidates. ns = not significant. D. Identification of N. musculi genes with similarity to Neisseria filamentous and Mu-type prophages. N. gonorrhoeae and N meningitidis ORFs encoded in prophage regions were searched against the N. musculi genome using KEGG GFIT SSDB searches and blastp. (XLSX)