Dataset for testing galEupy performance
收藏资源简介:
This dataset contains the genome assemblies and annotation files used to evaluate the performance of galEupy, a relational genome data management framework. The archive includes: Genome FASTA files Corresponding GFF3 annotation files EggNOG-mapper functional annotation outputs Configuration templates used for ingestion The dataset comprises 13 fungal and oomycete genomes with varying genome sizes, gene counts, and scaffold fragmentation levels. These datasets were used to measure schema initialization time, genome ingestion performance, and database indexing duration as reported in the manuscript. All genomes included in this archive are publicly available from their respective primary repositories. This archive aggregates the exact input files used for benchmarking to facilitate reproducibility. For software and installation instructions, see:https://github.com/computational-genomics-lab/galEupy
本数据集包含用于评估关系型基因组数据管理框架galEupy性能的基因组组装结果与注释文件。 该归档文件包含以下内容: - 基因组FASTA格式文件 - 对应的GFF3格式注释文件 - EggNOG-mapper功能注释结果 - 用于数据导入的配置模板 本数据集涵盖13个真菌与卵菌基因组,其基因组大小、基因数量及支架碎片化程度均存在差异。上述数据集被用于测量论文中报道的数据库模式(schema)初始化时长、基因组数据导入性能及数据库索引耗时。 本归档文件中的所有基因组均已通过其对应的原始公共仓库公开获取。本归档整合了基准测试所用的精准输入文件,以确保实验可重复性。 如需获取软件及安装说明,请访问:https://github.com/computational-genomics-lab/galEupy



