Spatial recovery of the murine gut microbiota after antibiotics perturbation - Raw data

The raw data for the mBio publication "Spatial recovery of the murine gut microbiota after antibiotics perturbation" is hosted here. The code for generating the analysis and figures found in the mBio publication is in the github repository https://github.com/MSDLLCpapers/mtag-Spatial_Abx_Manuscript.The raw images are found in the "RawData_Images" file.The spatial data is found in data/Spatial_and_Abundance which is analyzed by the python code in the github repo under bin/ to create the files in data/BugCountsR5_Mar242023.