Everything is everywhere but E. coli adapts to different niches

Results from microbial GWAS looking at E. coli host adaption to wild animals, unicavitary (not pig), ruminant (not cow), pig, domestic animals, companion animals, chickens, and birds (not chickens). For each host category there are 100x pyseer files relating to: input phenotype, phylogroup lineage effects, k-mer hits, k-mer hit results for plotting, distance.