SARS-Cov2 Kraken database

Viral Kraken database built on 04/04/2020 for nf-core/viralrecon pipeline testing, Kraken version: <pre><code>Kraken version 2.0.8-beta Copyright 2013-2019, Derrick Wood ([e-mail])</code></pre> Commands: <pre><code>kraken2-build --db kraken2_viral --threads 2 --use-ftp --download-taxonomy kraken2-build --db kraken2_viral --threads 2 --use-ftp --download-library viral kraken2-build --db kraken2_viral --threads 2 --use-ftp --build</code></pre> Files: <pre><code>## Minimal kraken2-build output files required to run kraken2 ## See kraken2_viral.tree.txt for file listing kraken2_viral.tar.gz kraken2_viral.tar.gz.md5 kraken2_viral.tree.txt ## Additional kraken2-build output files that can be used in conjunction with bracken-build ## See kraken2_viral.bracken.tree.txt for file listing kraken2_viral.bracken.tar.gz kraken2_viral.bracken.tar.gz.md5 kraken2_viral.bracken.tree.txt</code></pre>本Viral Kraken数据库于2020年4月4日构建，用于nf-core/viralrecon流程的测试，所用Kraken版本信息如下： <pre><code>Kraken version 2.0.8-beta Copyright 2013-2019, Derrick Wood ([e-mail])</code></pre> 构建命令如下： <pre><code>kraken2-build --db kraken2_viral --threads 2 --use-ftp --download-taxonomy kraken2-build --db kraken2_viral --threads 2 --use-ftp --download-library viral kraken2-build --db kraken2_viral --threads 2 --use-ftp --build</code></pre> 所需文件如下： <pre><code>## 运行kraken2所需的最小kraken2-build输出文件 ## 详细文件列表请见kraken2_viral.tree.txt kraken2_viral.tar.gz kraken2_viral.tar.gz.md5 kraken2_viral.tree.txt ## 可与bracken-build配合使用的额外kraken2-build输出文件 ## 详细文件列表请见kraken2_viral.bracken.tree.txt kraken2_viral.bracken.tar.gz kraken2_viral.bracken.tar.gz.md5 kraken2_viral.bracken.tree.txt</code></pre>