Additional file 1: Table S1. of Genome sequence of the ectophytic fungus Ramichloridium luteum reveals unique evolutionary adaptations to plant surface niche

Genome characteristics of R. luteum. Table S2. Species used in this comparative study. Table S3. The expression of 59 candidate effectors in R. luteum. Green fills represent the up-regulated genes on ectophytic growth. Table S4. Number of carbohydrate-active enzyme modules of R. luteum and 12 other fungi according to the CAZY database. GHs = Glycosyl hydrolases; GTs = Glycosyl transferases; CBMs = Carbohydrate-binding modules; CEs = Carbohydrate esterase; AAs = Auxiliary activities; PLs = Polysaccharide lyases. Table S5. Up-regulated genes involved in PCWDEs of R. luteum on the apple surface. Table S6. Nine secretory lipases show best-hit relationships with the fungi in NCBI nr database. Table S7. Orthologues and putative orthologues in response regulator-dependent osmotic and oxidative stress-response regulatory in R. luteum. Table S8. General features of data got by the high throughput transcriptome analysis. (XLS 72 kb)

黄体菌（R. luteum）的基因组特征。表S2：本比较研究中使用的物种。表S3：59个候选效应因子在黄体菌（R. luteum）中的表达谱，绿色填充代表外生生长阶段上调表达的基因。表S4：基于CAZY数据库（CAZY database）统计的黄体菌（R. luteum）与其他12种真菌的碳水化合物活性酶模块数量，各缩写对应如下：GHs = 糖基水解酶（Glycosyl hydrolases）；GTs = 糖基转移酶（Glycosyl transferases）；CBMs = 碳水化合物结合模块（Carbohydrate-binding modules）；CEs = 碳水化合物酯酶（Carbohydrate esterase）；AAs = 辅助活性酶（Auxiliary activities）；PLs = 多糖裂解酶（Polysaccharide lyases）。表S5：黄体菌在苹果表面定殖时，涉及植物细胞壁降解酶（PCWDEs）的上调表达基因。表S6：9种分泌型脂肪酶与NCBI非冗余蛋白序列数据库（NCBI nr database）中的真菌物种具有最优同源匹配关系。表S7：黄体菌中依赖应答调节因子的渗透胁迫与氧化胁迫应答调控通路相关的直系同源基因及推定直系同源基因。表S8：高通量转录组分析所得数据的基本概况（XLS格式，72 kb）