Soil chemistry and ITS sequences of permanent forest plots at the Station de biologie des Laurentides
收藏资源简介:
Data of soil chemistry, ITS sequences and plots informations. Target soil fungi using Illumina sequencing with ITS as marker gene. 15 permanent plots of forests dominated by arbuscular mycorrhizal or ectomyoccrhizal trees or both. Located at the Station de Biologie des Laurentides, Université de Montréal. Files : *fastq.gz contain the sequence data for each samples soil.csv contains soil chemistry and plots informations. label_soil_sample.csv links identifiers for sequencing (i.e. sample) and soil analysis (i.e. sampleID) Scripts for bioinformatical and statistical analyses can be found here: https://doi.org/10.5281/zenodo.3631982
本数据集包含土壤化学数据、ITS(Internal Transcribed Spacer,内部转录间隔区)序列数据及样地信息。本研究以ITS作为标记基因,采用Illumina测序技术对目标土壤真菌开展测序分析。 共设置15个永久性森林样地,其优势树种分别为丛枝菌根(arbuscular mycorrhizal)植物、外生菌根(ectomycorrhizal)植物,或二者兼具。样地设于蒙特利尔大学拉蒙蒂德生物学站(Station de Biologie des Laurentides, Université de Montréal)。 数据文件说明如下:所有后缀为.fastq.gz的文件存储各样本的序列数据;soil.csv文件包含土壤化学信息与样地详情;label_soil_sample.csv文件用于关联测序样本标识符与土壤分析样本标识符(sampleID)。 用于生物信息学与统计分析的脚本可通过以下链接获取:https://doi.org/10.5281/zenodo.3631982



