Additional file 1 of Genetic diversity and signatures of selection for heat tolerance and immune response in Iranian native chickens

Additional file 1: Table S1: Sample information for each chicken (72 individuals) used in this study. Table S2. Chromosome-length and number of detected variants before and after filtering. Table S3. Mean number of ROHs longer than different classes (Kb).Table S4. Summary diversity results. Proportion of polymorphic SNPs (PN ), Observed heterozygosity (Ho), Expected heterozygosity (He), and average inbreeding coefficient (F) for each studied group. Table S5: Positively selected genes (top %5) identified between indigenous group and White-Leghorn identified by FST method. Table S6. Positively selected genes identified by top 1% highest log2 (θπ·Native-ecotypes/θπ·White-Leghorn). Table S7. Positively selected genes (top %5) identified by FST method between indigenous group and Arian. Table S8: Positively selected genes identified by top 1% highest log2 (θπ·Native-ecotypes/θπ·Arian). Table S9. Overrepresented GO categories among genes showing high Fst values between indigenous group and White-Leghorn. Table S10. Overrepresented GO categories among genes showing high log2 (θπ·Native-ecotypes/θπ·White-Leghorn). Table S11. Overrepresented GO categories among genes showing high Fst values (indigenous group versus Arian). Table S12. Overrepresented GO categories among genes showing high log2 (θπ·Native-ecotypes/θπ·Arian).