Additional file 2 of Multi-proxy analyses of a mid-15th century Middle Iron Age Bantu-speaker palaeo-faecal specimen elucidates the configuration of the ‘ancestral’ sub-Saharan African intestinal microbiome

Additional file 2: Table S1. Sequence reads for environmental- and subsistence-related taxa detected. Table S2. Information concerning 14C Accelerator Mass Spectrometry (AMS) dating. Table S3a. Processing protocol and results for isotope analyses. Table S3b. Results for isotope analyses (Merck standard). Table S3c. Results for isotope analyses (DL-Valine standard). Table S4. Abundance of bacterial taxonomic categories in the IM datasets. Table S5. Sequence read-length distribution for taxa identified in this study. Table S6. Significant KEGG pathways in the comparative IM datasets analysed. Table S7. Relative abundance of eighteen significant KEGG pathways in the IM cohorts. Table S8. Enrichment and depletion of KO metabolic gene categories in the comparative IM sample cohorts based on p-value (p=<0.05) designation. Table S9. Enrichment and depletion of KO metabolic gene categories in the comparative IM sample cohorts based on false discovery rate (FDR) corrected p-values (q=<0.05). Table S10. Enrichment and depletion of KO metabolic gene categories in the ancient and modern comparative IM sample cohort as calculated for the twenty-four authenticated ancient IM taxa. Table S11. Comparison of relative abundance of antibiotic resistance genes in the comparative IM cohorts. Table S12. Raw and filtered high-quality sequence read counts as related to the comparative IM datasets. Table S13. Information concerning the comparative NCBI genomes used during this study.