secondary_structures_of_eukaryotic_group_II_introns_rfam_set(multicopy)

Figshare2019-11-17 更新2026-04-08 收录

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https://figshare.com/articles/secondary_structures_of_eukaryotic_group_II_introns_rfam_set_multicopy_/9930110/4 数据链接链接失效反馈

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secondary_structures_of_eukaryotic_group_II_introns_rfam_set(multicopy)

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2019-11-17

Base pair distance between the sampled and native structures for cis -regulatory elements from Hepatitis C virus and HIV

RNA二级结构预测

非编码RNA分析

Native structure is here taken as the Rfam consensus structure from the seed alignments of these elements of HCV and HIV. Two measures are given. The average distance represents the average base pair

NIAID Data Ecosystem60

Benchmark results.

RNA二级结构预测

生物信息学基准

A comparison of three secondary structure prediction algorithms, using shape data from Deigan et al. [15] for the three RNA molecules, yeast aspartyl tRNA (asp-tRNA), hepatitis C virus internal riboso

Figshare2015-12-02 更新20

Supplemental Data S1

RNA二级结构预测

基因组序列分析

Supplemental Data S1. ScanFold output for all genomes. Raw output alongside files used to visualize data. Please see README for detailed descriptions of each file.

Zenodo2020-08-01 更新10

Structures of phage-related introns predicted using LinearTurboFold

RNA二级结构预测

噬菌体基因组

Files used to create SVG illustrations shown in Supplementary figure S2 of the paper:1. LinearTurboFold alignments/structures2. GFF annotation files used to color structure (results of annotate_intron

Figshare2025-01-31 更新40

multimolecule/ipknot_plus_plus

RNA二级结构预测

假结结构分析

IPknot++是一个用于RNA二级结构预测的基准数据集，随IPknot++论文发布。该数据集旨在作为外部评估集，而非训练分割，通常用于在SPOT-RNA风格的分割（如bpRNA-spot）上训练或调优RNA二级结构预测模型后，评估模型的泛化能力。原始发布未定义训练和验证分区，因此每个变体都作为单一的测试分割发布。数据集包含三个变体：1) ipknot_plus_plus：单序列结构，无多序列对齐

Hugging Face2026-06-09 更新20

secondary_structures_of_eukaryotic_group_II_introns_rfam_set(multicopy)

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