Data files and taxonomic classifiers for Pseudomonas syringae classification and virulence factor prediction
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下载链接：
https://zenodo.org/record/7343279
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资源简介：
PSSC.tree : core-genome tree of 2,161 high quality Pseudomonas syringae genomes
metadata.csv: A CSV file containing taxonomic data, type strain designations, phylogroups as assigned in this study, LIN clusters assigned for classification purposes, presence/absence of key virulence factors, and metadata found in each genome’s Biosample record for all genomes found in PSSC.tree
CLASSIFIER_xxx: QIIME 2 classifier artifacts trained on amplicons generated from primer sets indicated in file name
xxx_VFOC.JSON: HMMER results for T3SS and effectors and WHOP genes, structured with both genome and gene product accession numbers as primary key, depending on file
创建时间：
2023-08-29
