遇见数据集

Illumina short read DNA-seq of Solanum habrochaites PI127826 and LA1777 DNA

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Zenodo2020-08-27 更新2026-05-25 收录
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Illumina paired-end HiSeqX reads from the genomic DNA isolated from young leaves of three plants from S. habrochaites: Solanum habrochaites PI127826 Solanum habrochaites LA1777 (wild-type) Solanum habrochaites LA1777 X-ray mutated to allow self-compatibility <strong>Variant Call Format file (VCF files)</strong> Variants have been called from this DNA-seq file using the Solanum lycopersicum ITAG4.0 genome assembly and a custom-made [variant-calling pipeline] (https://github.com/BleekerLab/freebayes_snp_calling/releases/tag/v0.1.0). S. habrochaites PI127826 variants: [PI127826.vcf.tar.gz](https://zenodo.org/api/files/5ff35841-acab-43cc-842f-2f140ccc0ba6/PI127826.vcf.tar.gz)

本数据集包含Illumina双端HiSeqX平台测序读段,提取自三株多毛番茄(Solanum habrochaites)幼叶的基因组DNA,具体供试材料为:多毛番茄PI127826、多毛番茄LA1777(野生型)、经X射线诱变获得自交亲和性的多毛番茄LA1777。 **变异识别格式(Variant Call Format,VCF)文件** 本研究基于上述DNA测序数据,以栽培番茄(Solanum lycopersicum)ITAG4.0基因组组装版本为参考序列,结合定制开发的[变异识别流程(variant-calling pipeline)](https://github.com/BleekerLab/freebayes_snp_calling/releases/tag/v0.1.0)完成了全基因组变异位点的识别。 多毛番茄PI127826的变异位点数据集可通过以下链接获取:[PI127826.vcf.tar.gz](https://zenodo.org/api/files/5ff35841-acab-43cc-842f-2f140ccc0ba6/PI127826.vcf.tar.gz)

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Zenodo
创建时间:
2020-08-27
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