MultiClinSum Dataset: Summarization of Clinical Case Reports in English, Spanish, French and Portuguese

MultiClinSum Shared Task Dataset MultiClinSum is a shared task about the automatic summarization of clinical case reports in English, Spanish, French and Portuguese held as part of the BioASQ workshop at CLEF 2025. The task relies on a corpus of manually selected full clinical case reports and their corresponding clinical case report summaries derived from case report publications written in the previously mentioned languages. In addition, participants are allowed to use any other data source available online as long as they report it. This version of the data contains the sample set: a small subset of 20 full-text documents and their summaries in English meant to be used as a sample of the data that will be used in the task. Both the full-texts and their summaries are .txt documents in UTF-8. They are separated in different folders and each pair have an almost identical filename, with the summaries having the suffix "_sum". Resources: - MultiClinSum website - BioASQ website License This work is licensed under a Creative Commons Attribution 4.0 International License. Contact If you have any questions or suggestions, please contact us at: - Salvador Lima-López (<salvador [dot] limalopez [at] gmail [dot] com>)- Martin Krallinger (<krallinger [dot] martin [at] gmail [dot] com>) Additional resources and corpora If you are interested in MultiClinSum, you might want to check out these corpora and resources: DisTEMIST (Corpus of disease mentions and normalization to SNOMED CT) MedProcNER (Corpus of clinical procedure mentions and normalization to SNOMED CT) SympTEMIST (Corpus of clinical findings and normalization to SNOMED CT) DrugTEMIST (Corpus of medication mentions) CardioCCC (Corpus of diseases and medication mentions in cardiology texts) PharmaCoNER (Corpus of medications, drugs, chemical substances, genes, proteins and vaccine mentions and normalization) MEDDOPROF (Corpus of mentions of professions, occupations and working status and normalization) MEDDOPLACE (Corpus of mentions of place-related entity mentions, including departments, nationalities or patient movements etc.. and normalization) MEDDOCAN (Corpus of mentions of Personal Health Identifiers (PHI)) CANTEMIST (Corpus of cancer tumor morphology mentions and normalization) CodiESP (Corpus of clinical case reportes with assigned clinical codes from ICD10, Spanish version) LivingNER (Corpus of mentions of species, including human/family members, pathogens, food, etc.. and normalization to NCBI Taxonomy) SPACCC-POS (Corpus of clinical case reports in Spanish annotated with POS-tags) SPACCC-TOKEN (Corpus of clinical case reports in Spanish annotated with token-tags (word mention boundaries)) SPACCC-SPLIT (Corpus of clinical case reports in Spanish annotated with sentence boundary-tags) MESINESP-2 (Corpus of manually indexed records with DeCS /MeSH terms comprising scientific literature abstracts, clinical trials, and patent abstracts)# MultiClinSum共享任务数据集（MultiClinSum Shared Task Dataset） MultiClinSum是一项面向英文、西班牙文、法文及葡萄牙文临床病例报告自动摘要的共享任务，该任务作为2025年CLEF会议旗下BioASQ研讨会的组成部分举办。本任务依托手动遴选的完整临床病例报告语料库，以及来自上述语种的病例报告出版物对应的人工撰写临床病例报告摘要。此外，参赛选手可使用线上任意其他可用数据源，但需对所使用的外部数据源进行说明。 本版本数据集包含示例集（sample set）：由20篇完整文本及其英文摘要组成的小型子集，用作本次任务所用数据的示例。完整文本及其摘要均为UTF-8编码的.txt文档，分别存储于不同文件夹中，每一组文件的文件名几乎完全一致，摘要文件带有后缀"_sum"。 ## 资源 - MultiClinSum官方网站 - BioASQ官方网站 ## 许可协议 本作品采用知识共享署名4.0国际许可协议（Creative Commons Attribution 4.0 International License）进行许可。 ## 联系方式 如有任何疑问或建议，请通过以下邮箱联系我们： - Salvador Lima-López（<salvador [dot] limalopez [at] gmail [dot] com>） - Martin Krallinger（<krallinger [dot] martin [at] gmail [dot] com>） ## 附加资源与语料库 若您对MultiClinSum感兴趣，可参考以下语料库及资源： - DisTEMIST（疾病提及与SNOMED CT规范化语料库） - MedProcNER（临床操作提及与SNOMED CT规范化语料库） - SympTEMIST（临床发现与SNOMED CT规范化语料库） - DrugTEMIST（药物提及语料库） - CardioCCC（心脏病学文本中的疾病与药物提及语料库） - PharmaCoNER（药物、化学品、基因、蛋白质及疫苗提及与规范化语料库） - MEDDOPROF（职业、工作状态提及与规范化语料库） - MEDDOPLACE（地点相关实体提及（包括科室、国籍或患者流动等）与规范化语料库） - MEDDOCAN（个人健康标识符（PHI，Personal Health Identifiers）提及语料库） - CANTEMIST（肿瘤形态学提及与SNOMED CT规范化语料库） - CodiESP（带有ICD10西班牙版临床编码的临床病例报告语料库） - LivingNER（物种提及（包括人类/家庭成员、病原体、食品等）与NCBI分类学（NCBI Taxonomy）规范化语料库） - SPACCC-POS（带词性标注的西班牙文临床病例报告语料库） - SPACCC-TOKEN（带Token词边界标注的西班牙文临床病例报告语料库） - SPACCC-SPLIT（带句子边界标注的西班牙文临床病例报告语料库） - MESINESP-2（包含DeCS/MeSH术语的人工标引记录语料库，涵盖科学文献摘要、临床试验及专利摘要）