Whole Genome Analysis of Divergence.

(A) Genome-wide nucleotide-based divergence (CorrectedForAL) between the scarlet macaw (Ara macao; simple de novo assembly) and chicken genomes (Gallus gallus 2.1). (B) Genome-wide nucleotide-based divergence (CorrectedForAL) between the scarlet macaw (Ara macao; simple de novo assembly) and zebra finch genomes (Taeniopygia guttata 1.1, 3.2.4). Each histogram represents the full, ordered distribution of the composite variable defined as: . The observed ranges of the composite variable for pane (A) and pane (B) were 3.89591E-05–0.052631579, and 3.33792E-05–0.052631579, respectively. The left edges of the distributions represent extreme conservation, whereas the right edges indicate extreme putative divergence. Distributional outliers were predicted using a percentile-based approach (99.98th and 0.02th) to construct interval bounds capturing >99.9% of the total data points in each ordered distribution.(A) 绯红金刚鹦鹉（Ara macao；简易从头组装（de novo assembly））与鸡基因组（Gallus gallus 2.1）之间的全基因组核苷酸差异（CorrectedForAL）。 (B) 绯红金刚鹦鹉（Ara macao；简易从头组装）与斑胸草雀基因组（Taeniopygia guttata 1.1、3.2.4）之间的全基因组核苷酸差异（CorrectedForAL）。 每张直方图均代表所定义复合变量的完整有序分布：。 子图(A)与子图(B)中复合变量的观测取值范围分别为3.89591×10^-5 ~ 0.052631579和3.33792×10^-5 ~ 0.052631579。 分布的左边缘代表极端保守区域，右边缘则代表推测的极端序列分化区域。 分布异常值通过基于百分位数的方法（99.98th与0.02th百分位数）进行预测，该方法构建的区间边界可捕获每个有序分布中99.9%以上的总数据点。