Data (part 6) from Illuminating the functional landscape of the dark proteome across the Animal Tree of Life through natural language processing models

Part 6 contains:

model_organisms_semsim_go_cats.txt : semantic similarity separated by GO category between the GO annotations from GOPredSim-ProtT5 before and after removing a given model organism from the lookup dataset.

model_organisms_removed_confidence_min.txt : minimum reliability index ("confidence") per gene of GO annotations from GOPredSim-ProtT5 after removing a given model organism from the lookup dataset.

model_organisms_prott5.tar.gz : GO annotations from GOPredSim-ProtT5 after removing a given model organism from the lookup dataset.

model_organisms_orig_confidence_min.txt : minimum reliability index ("confidence") per gene of GO annotations from GOPredSim-ProtT5 before removing a given model organism from the lookup dataset.

all_isoforms_cdhit_clustr.tar.gz : CD-HIT clusters results for all isoforms for a subset of 102 species.

all_isoforms_larger_5k.tar.gz : headers of sequences that are more than 5000 aminoacids long after CD-HIT for all isoforms of a subset of 102 species.

longest_cdhit_clustr.tar.gz : CD-HIT clusters results for the longest isoforms of all species.

longest_larger_5k.tar.gz : headers of sequences that are more than 5000 aminoacids long after CD-HIT for the longest isoforms all species.