Additional file 2 of Variance of allele balance calculated from low coverage sequencing data infers departure from a diploid state
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Additional file 2 Tables S1 Summary results for 1,000 tests simulating different ploidies and different levels of coverage; Table S2 SRA information and values calculated for downsampled data of Bremia lactucae isolates used to validate the variance of allele balance approach; Table S3 SRA information and values calculated for Phytophthora infestans isolates used in this study; Table S4 SRA information and values calculated for downsampled Saccharomyces cerevisiae isolates used in this study; Table S5 SRA information and values calculated for Arabidopsis arenosa individuals used in this study; Table S6 Variance of allele balance values calculated for European race type isolates of Bremia lactucae in this study; and Table S7 Number of mutations introduced into each synthetic haplotype. Lower numbers are a subset of the larger preceding number. Each table is on a separate tab of the excel workbook (XLSX 35 kb).
附加文件2:表格S1 为1000次模拟不同倍性与不同测序覆盖度水平试验的汇总结果;表格S2 为用于验证等位基因平衡方法方差的莴苣霜霉(*Bremia lactucae*)分离物下采样数据的序列读取存档(Sequence Read Archive, SRA)信息及计算所得数值;表格S3 为本研究中使用的致病疫霉(*Phytophthora infestans*)分离物的SRA信息及计算所得数值;表格S4 为本研究中使用的酿酒酵母(*Saccharomyces cerevisiae*)分离物下采样数据的SRA信息及计算所得数值;表格S5 为本研究中使用的异蕊拟南芥(*Arabidopsis arenosa*)个体的SRA信息及计算所得数值;表格S6 为本研究中欧洲莴苣霜霉生理小种分离物的等位基因平衡值方差;表格S7 为各合成单倍型所引入的突变数量。序号较小的表格为前序序号较大表格的子集。所有表格均存储于该Excel工作簿的独立工作表中(文件格式为XLSX,大小35 KB)。
创建时间:
2023-06-28



