Additional file 1 of RNA-Seq reveals different responses to drought in Neotropical trees from savannas and seasonally dry forests

Additional file 1 Supplementary Tables with summary of sequence data analysis and results of functional annotation and enrichment analysis, acronyms and Transcription Factor Families among differentially expressed genes (DEGs), including Tables S1 to S7. Table S1 Summary of sequence data for each library before and after filtering. % loss is the percentage of reads removed after filtering; Table S2 Alignment of RNA-seq reads of each library in the reference genome of Handroanthus impetiginosus, using the software STAR. % mapping is the percentage of reads mapped to one contig of the reference genome; % multiple is the percentage of reads mapped to more than one contig; % non-alignment is the percentage of reads not aligned to the reference genome; % MAPQ > = 30 is the percentage of reads with mapping alignment > = 30; Table S3 Functional enrichment of GO terms for up- and down-regulated genes in Tabebuia aurea, based on the Fisher exact test with a false discord rate (FDR) < 0.05. Ontology is the class of gene function; F, molecular function; P, biological process; C, cellular component; Number in BG/Ref, number of GO terms in the reference genome; Table S4 Functional enrichment of GO terms for up and down-regulated genes in Handroanthus impetiginosus, based on the Fisher exact test with a false discord rate (FDR) < 0.05. Ontology is the class of gene function; F, molecular function; P, biological process; C, cellular component; Number in BG/Ref, number of GO terms in the reference genome; Table S5 Functional enrichment of GO terms for up and down-regulated genes in Handroanthus serratifolius, based on the Fisher exact test with a false discord rate (FDR) < 0.05. Ontology is the class of gene function; F, molecular function; P, biological process; C, cellular component; Number in BG/Ref, number of GO terms in the reference genome; Table S6 Functional anotation of Handroanthus impetiginosus genes with differential expression represented by log2-fold-change, in T. aurea, H. ochraceus, H. impetiginosus and H. serratifolius. The table shows shared and exclusive expressed genes among species, based on the reference genome annotation. Gene_name: gene name of H. impetiginosus genes; Acession: Acession identifier to H. impetiginosus genes on NCBI; Protein_product: Protein identifier to H. impetiginosus products on NCBI; Uniprot_name: Uniprot identifier to H. impetiginosus genes; Best_hit: Blast best hit result against Arabidopsis thaliana proteins (v. Araport11); Description: description of A. thaliana genes; GO_Term: gene ontology term; EC_number: enzyme comission number of enzyme; KO_identifier: KEGG orthology identifier; KOG: eukaryotic orthologous group; PANTHER: protein alnalysis through evolutionary relationships; PFAM: protein families; log2FC: log2-fold-change; padj: adjusted p-value with false discovery rate (FDR); CEG: conserved expressed genes; DiEG: divergent expressed genes; Table S7 Description of the acronyms of Transcription Factors Family among differentially expressed genes (DEGs) in H. impetiginosus, H. ochraceus, H. serratifolius and T. aurea. (XLSX 5179 kb)