遇见数据集

Long reads training material for 'Quality Control' tutorial (Galaxy Training Material)

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Zenodo2021-11-26 更新2026-05-25 收录
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The data provided here are part of a Galaxy Training Network tutorial for reads Quality Control. PacBio HiFi reads were provided by PacBio - GIAB sample HG002 (https://www.pacb.com/smrt-science/smrt-resources/datasets/) and was downsampled using seqtk (https://github.com/lh3/seqtk) Nanopore reads were provided by Tim Kahlke as part of "Long-Read, long reach Bioinformatics Tutorials" (https://timkahlke.github.io/LongRead_tutorials/) and was basecalled using Guppy v5.0.2 (dna_r9.4.1_450bps_sup.cfg).

本数据集所提供的数据属于Galaxy训练网络(Galaxy Training Network)的读段质量控制教程的一部分。其中PacBio HiFi 读段(PacBio HiFi reads)由PacBio提供,对应GIAB样本HG002,数据来源为https://www.pacb.com/smrt-science/smrt-resources/datasets/,并通过seqtk(https://github.com/lh3/seqtk)完成降采样处理。纳米孔读段(Nanopore reads)则由Tim Kahlke提供,隶属于"Long-Read, long reach Bioinformatics Tutorials"项目,数据来源为https://timkahlke.github.io/LongRead_tutorials/,并使用Guppy v5.0.2(dna_r9.4.1_450bps_sup.cfg)完成碱基识别。

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Zenodo
创建时间:
2021-11-23
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