SNP dataset for the springtail Hypogastrura viatica
收藏Research Data Australia2024-12-14 收录
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https://researchdata.edu.au/snp-dataset-springtail-hypogastrura-viatica/1431573
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资源简介:
Dataset of 7275 genome-wide Single Nucleotide Polymorphisms for the springtail Hypogastrura viatica in VCF format. An excel spreadsheet with associated metadata (sample collection details) is also supplied. The SNPs were generated at Diversity Arrays Technology (Canberra, Australia) using reduced representation next-generation sequencing, and subsequently quality filtered according to the methods outlined in the associated manuscript: Baird, H.P., Moon, K.L., Janion-Scheepers, C. & Chown, S.L. (2020) Springtail phylogeography highlights biosecurity risks of repeated invasions and intraregional transfers among remote islands. Evolutionary Applications, doi:10.1111/eva.12913
本数据集涵盖潮生矮跳虫(Hypogastrura viatica)的7275个全基因组范围单核苷酸多态性(Single Nucleotide Polymorphisms, SNPs),数据以VCF格式存储。同时附带一份包含相关元数据(样本采集详情)的Excel电子表格。这些SNPs由澳大利亚堪培拉的多样性阵列技术(Diversity Arrays Technology)公司通过简化基因组下一代测序技术生成,随后依据关联研究论文中所述方法完成质量过滤:Baird, H.P.、Moon, K.L.、Janion-Scheepers, C. 与 Chown, S.L.(2020)发表于《进化应用》(Evolutionary Applications)的论文《跳虫系统地理学揭示偏远岛屿间重复入侵与区域内转移的生物安全风险》,doi:10.1111/eva.12913
提供机构:
Monash University



