遇见数据集

Metagenomics Dataset From Chemocline of Lake Cadagno

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Zenodo2024-03-15 更新2026-05-26 收录
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The metagenomics dataset was collected from the persistent microbial bloom from the chemocline (oxic-anoxic boundary) of Lake Cadagno. The location of the chemocline was between 13-15.5 m in depth. There are a total of 4 metagenomics samples; one from 13 m, two from 15 m (with and without mesh collected from the peak of turbidity), and one from 15.5 m. The title of the prospective publication is <em>Metagenomics provides a near-complete genome of Chlorella-like microbial eukaryote and reveals its potential for carbon, sulphur and nitrogen metabolism in Proterozoic ocean analogue</em> List of data: SPAdes generated main metagenomics assemblies, Overall MAGs obtained using CONCOCT, Novel refined Chlorophyta MAG with its raw reads and group. Plus, two additional chloroplast genomes.

本宏基因组(metagenomics)数据集采集自卡达尼奥湖(Lake Cadagno)化学跃层(chemocline,即氧-缺氧界面)处持续存在的微生物水华。该化学跃层的分布深度为13至15.5米。 本数据集共包含4个宏基因组样本:1个采自13米深度,2个采自15米深度(分别为从浊度峰值处使用滤膜采集与未使用滤膜采集的样本),以及1个采自15.5米深度的样本。 该数据集关联的待发表论文标题为:*《宏基因组学获取类小球藻微生物真核生物近乎完整基因组,并揭示其在元古代海洋类似环境中参与碳、硫及氮代谢的潜力》* 数据集包含以下内容:SPAdes生成的主要宏基因组组装结果、通过CONCOCT工具获取的全部宏基因组组装基因组(Metagenome-Assembled Genomes,MAG)、经优化的新型绿藻门(Chlorophyta)宏基因组组装基因组及其原始测序读段与类群信息,此外还包含2个额外的叶绿体基因组。

提供机构:
Zenodo
创建时间:
2022-08-17
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