MLST loci and antimicrobial resistance gene sequences of Enterococcus spp. isolated from poultry caecal samples

Title: Diversity and molecular characterisation of multidrug-resistant Enterococcus from chicken caecal samples in Tunisia: Detection of transmissible vancomycin and linezolid resistance genes Description:This repository contains DNA sequence datasets generated by Sanger sequencing during the current study on antimicrobial-resistant Enterococcus spp. isolated from poultry samples. Content of the repository: 1. E_faecium_MLST_sequences.zip Contains FASTA formats of MLST loci sequences (seven housekeeping genes) for each representative isolate of Enterococcus faecium. 2. E_faecalis_MLST_sequences.zip Contains FASTA formats of MLST loci sequences (seven housekeeping genes) for each representative isolate of Enterococcus faecalis. 3. Linezolid_resistance_genes.zip Contains FASTA formats of linezolid resistance genes detected in enterococci isolates. 4. vanA_sequences.zip Contains FASTA formats of vanA gene sequences detected in enterococci isolates. File format:All sequence files are provided in FASTA (.fasta) format. Sequence naming:Sequence filenames correspond to isolate identifiers reported in the manuscript tables. Associated data:Antimicrobial resistance (AMR) phenotypes, AMR genes, and Multilocus Sequence typing (MLST) data associated with the enterococci isolates are presented in the manuscript.标题：突尼斯鸡盲肠样本来源多重耐药肠球菌的多样性及分子特征解析：可传播万古霉素与利奈唑胺耐药基因的检测 描述：本数据集包含本研究针对家禽样本分离得到的抗菌药物耐药肠球菌属（Enterococcus spp.）开展桑格测序（Sanger sequencing）所获得的DNA序列数据集。 数据集内容： 1. E_faecium_MLST_sequences.zip：包含屎肠球菌（Enterococcus faecium）各代表性分离株的多位点序列分型（Multilocus Sequence Typing, MLST）位点序列（共7个持家基因）的FASTA格式文件。 2. E_faecalis_MLST_sequences.zip：包含粪肠球菌（Enterococcus faecalis）各代表性分离株的多位点序列分型位点序列（共7个持家基因）的FASTA格式文件。 3. Linezolid_resistance_genes.zip：包含肠球菌分离株中检测到的利奈唑胺耐药基因的FASTA格式文件。 4. vanA_sequences.zip：包含肠球菌分离株中检测到的vanA基因序列的FASTA格式文件。 文件格式：所有序列文件均采用FASTA（.fasta）格式存储。 序列命名规则：序列文件名与论文表格中记载的分离株标识符一一对应。 关联数据：本研究涉及的肠球菌分离株的抗菌药物耐药（Antimicrobial Resistance, AMR）表型、耐药基因及多位点序列分型数据均已在论文中予以呈现。