Accurate Prediction of Enzyme Thermostabilization with Rosetta using AlphaFold Ensembles
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DT<sub>M</sub> vs DG<sub>f,mut</sub> values for scoring LovD, LipA, <em>p</em>-nitrobenzyl esterase, xylanase A and tryptophan 6-halogenase variants (<em>DTM_vs_DDGf_mut.xlsx</em>). AlphaFold predicted structures in PDB and Pymol sessions formats for top scoring LovD, LovD6, LovD9, LipA WT, LipA 6B, <em>p</em>-nitrobenzyl esterase WT, xylanase A WT and tryptophan 6-halogenase WT decoys (<em>mAF-min_ensembles.zip</em>). Rosetta energies for all calculations (<em>Rosetta_scores.zip</em>).
用于对LovD、LipA、对硝基苄基酯酶(p-nitrobenzyl esterase)、木聚糖酶A(xylanase A)以及色氨酸6-卤化酶(tryptophan 6-halogenase)变体进行评分的DT<sub>M</sub>与DG<sub>f,mut</sub>数值,对应文件为DTM_vs_DDGf_mut.xlsx。针对得分最高的LovD、LovD6、LovD9、野生型LipA、LipA 6B、野生型对硝基苄基酯酶、野生型木聚糖酶A以及野生型色氨酸6-卤化酶的诱饵结构,提供阿尔法折叠(AlphaFold)预测的PDB格式与PyMol会话格式结构文件,对应压缩包为mAF-min_ensembles.zip。所有计算所用的罗塞塔(Rosetta)能量数据,对应压缩包为Rosetta_scores.zip。



