Supplemental Material for DeAngelis, Coolon, and Johnson, 2020

Comparisons of the transcriptomes of Drosophila pupal eyes at 21 and 40 hours after puparium formation.Supplementary Table 1: Expression of all loci at 21 and 40 h APF. Supplementary Table 2: Gene Ontology enrichment analysis for all significant differentially expressed loci between 21 and 40 h APF. Supplementary Table 3: Gene Ontology enrichment analysis for upregulated significant differentially expressed genes between 21 and 40 h APF. Supplementary Table 4: Gene Ontology enrichment analysis for downregulated significant differentially expressed genes between 21 and 40 h APF. Supplementary Table 5: Differentially expressed genes associated with signaling. Supplementary Table 6: Differentially expressed genes associated with ecdysone signaling.Supplementary Table 7: Differentially expressed genes associated with axon guidance.Supplementary Table 8: Differentially expressed genes associated with biological adhesion. Supplementary Table 9: Differentially expressed genes associated with cell survival. Supplementary Table 10: Differentially expressed genes associated with muscle structure and development. Supplementary Table 11: Summary of patterning defects for OMS analyses. Supplementary Table 12: Candidate transcription factors identified using Full i-Cis Target Analysis.