Supplemental Material for DeAngelis, Coolon, and Johnson, 2020

Comparisons of the transcriptomes of Drosophila pupal eyes at 21 and 40 hours after puparium formation.Supplementary Table 1: Expression of all loci at 21 and 40 h APF. Supplementary Table 2: Gene Ontology enrichment analysis for all significant differentially expressed loci between 21 and 40 h APF. Supplementary Table 3: Gene Ontology enrichment analysis for upregulated significant differentially expressed genes between 21 and 40 h APF. Supplementary Table 4: Gene Ontology enrichment analysis for downregulated significant differentially expressed genes between 21 and 40 h APF. Supplementary Table 5: Differentially expressed genes associated with signaling. Supplementary Table 6: Differentially expressed genes associated with ecdysone signaling.Supplementary Table 7: Differentially expressed genes associated with axon guidance.Supplementary Table 8: Differentially expressed genes associated with biological adhesion. Supplementary Table 9: Differentially expressed genes associated with cell survival. Supplementary Table 10: Differentially expressed genes associated with muscle structure and development. Supplementary Table 11: Summary of patterning defects for OMS analyses. Supplementary Table 12: Candidate transcription factors identified using Full i-Cis Target Analysis.本数据集针对果蝇蛹形成后21小时与40小时的蛹眼转录组开展对比分析。 补充表1：蛹形成后21小时与40小时所有基因位点的表达情况 补充表2：21与40小时APF（after puparium formation，蛹形成后）间所有显著差异表达位点的基因本体（Gene Ontology）富集分析结果 补充表3：21与40小时APF间上调显著差异表达基因的基因本体富集分析结果 补充表4：21与40小时APF间下调显著差异表达基因的基因本体富集分析结果 补充表5：与信号通路相关的差异表达基因 补充表6：与蜕皮激素信号通路相关的差异表达基因 补充表7：与轴突导向相关的差异表达基因 补充表8：与生物黏附相关的差异表达基因 补充表9：与细胞存活相关的差异表达基因 补充表10：与肌肉结构及发育相关的差异表达基因 补充表11：OMS分析的模式缺陷汇总 补充表12：通过全顺式作用靶点分析（Full i-Cis Target Analysis）鉴定得到的候选转录因子