遇见数据集

Mesmerize volumetric zebrafish dataset

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Figshare2021-06-08 更新2026-04-28 收录
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Zebrafish volumetric calcium imaging dataset analyzed in Mesmerize and provided as a Mesmerize Project.The file will decompress into 47.5GB.decompress using pigz:`pigz -dc zfish_proj.tar.gz | tar xf -`If you cannot install pigz use tar, but it will be much slower:`tar xvzf zfish_proj.tar.gz`For information on Mesmerize please see:https://github.com/kushalkolar/MESmerizeFor information on how the dataset is organized please see:http://docs.mesmerizelab.org/en/master/user_guides/general/misc.html#project-structureRaw data was provided by Martin Haesemeyer from their paper: Haesemeyer M, Robson DN, Li JM, Schier AF, Engert F. A Brain-wide Circuit Model of Heat-Evoked Swimming Behavior in Larval Zebrafish. Neuron. 2018 May 16;98(4):817-831.e6. doi: 10.1016/j.neuron.2018.04.013. Epub 2018 May 3. PMID: 29731253; PMCID: PMC5985529.Please note: The Mesmerize dataset provided here is not related to the analysis from their paper. It is merely a basic re-analysis of the raw data that was used for their paper.

本数据集为已在Mesmerize中完成分析的斑马鱼体积钙成像数据集,以Mesmerize项目文件形式提供。该文件解压后总大小为47.5GB。推荐使用pigz工具进行解压:`pigz -dc zfish_proj.tar.gz | tar xf -`;若无法安装pigz,可使用tar命令解压,但解压速度会显著慢于前者:`tar xvzf zfish_proj.tar.gz`。有关Mesmerize的详细信息,请访问:https://github.com/kushalkolar/MESmerize。有关该数据集的组织结构说明,请参阅:http://docs.mesmerizelab.org/en/master/user_guides/general/misc.html#project-structure。本数据集的原始数据由Martin Haesemeyer提供,源自其发表的论文:Haesemeyer M, Robson DN, Li JM, Schier AF, Engert F. 幼斑马鱼热诱发游泳行为的全脑环路模型. 《Neuron》. 2018年5月16日;98(4):817-831.e6. DOI: 10.1016/j.neuron.2018.04.013. 2018年5月3日在线发表. PMID: 29731253; PMCID: PMC5985529。请注意:此处提供的Mesmerize数据集与该论文中的分析工作无关,仅为对该论文所用原始数据的基础重分析。

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2021-06-08
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