Genetic Polymorphisms in <i>P. vulgaris</i> Starch Genes Promoters

The reference genome used was <i>Phaseolus vulgaris</i> v2.1 (Phytozome genome ID: 442, NCBI taxonomy ID: 3885). Raw whole genome sequences of 126 common bean individual plants (NCBI, PRJNA471678) were processed using Trimmomatic and mapped to the v2.1 common bean reference genome with the BWA aligner. The alignments were then subjected to GATK MarkDuplicates to tag duplicated reads. Promoter regions of starch biosynthesis genes (2000 bp downstream to 200 bp upstream of the transcription start site) were extracted, and variants were called using BCFtools mpileup and call functions.<b>List of Starch Biosynthesis Genes Analyzed</b>Phvul.004G029100Phvul.009G052100Phvul.003G078800Phvul.008G033800Phvul.011G044000Phvul.007G139400Phvul.003G069200Phvul.002G096000